libristo machine learning in bioinformatics 4880882
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Machine Learning in Bioinformatics of Protein Sequences WSPC
Książki / Literatura obcojęzyczna
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Practical Bioinformatics for Beginners: From Raw Sequence Analysis to Machine Learning Applications WORLD SCIENTIFIC PUB CO INC
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Machine Learning In Bioinformatics
Książki Obcojęzyczne>Angielskie>Computing & information technology>Information technology: general issues
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Soft Computing For Machine Learning And Bioinformatics
Książki Obcojęzyczne>Angielskie>Computing & information technology>Computer hardware
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Applications Of Machine Learning Techniques To Bioinformatics
Książki Obcojęzyczne>Angielskie>Computing & information technology>Information technology: general issuesKsiążki Obcojęzyczne>Angielskie&g...
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Explainable Artificial Intelligence: An Introduction to Interpretable Machine Learning Springer Nature Switzerland AG
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This book is written both for readers entering the field, and for practitioners with a background in AI and an interest in developing real-world applications. The book is a great resource for practitioners and researchers in both industry and academia, and the discussed case studies and associated material can serve as inspiration for a variety of projects and hands-on assignments in a classroom setting. I will certainly keep this book as a personal resource for the courses I teach, and strongly recommend it to my students. --Dr. Carlotta Domeniconi, Associate Professor, Computer Science Department, GMUThis book offers a curriculum for introducing interpretability to machine learning at every stage. The authors provide compelling examples that a core teaching practice like leading interpretive discussions can be taught and learned by teachers and sustained effort. And what better way to strengthen the quality of AI and Machine learning outcomes. I hope that this book will become a primer for teachers, data Science educators, and ML developers, and together we practice the art of interpretive machine learning.--Anusha Dandapani, Chief Data and Analytics Officer, UNICC and Adjunct Faculty, NYUThis is a wonderful book! I'm pleased that the next generation of scientists will finally be able to learn this important topic. This is the first book I've seen that has up-to-date and well-rounded coverage. Thank you to the authors!--Dr. Cynthia Rudin, Professor of Computer Science, Electrical and Computer Engineering, Statistical Science, and Biostatistics & Bioinformatics Literature on Explainable AI has up until now been relatively scarce and featured mainly mainstream algorithms like SHAP and LIME. This book has closed this gap by providing an extremely broad review of various algorithms proposed in the scientific circles over the previous 5-10 years. This book is a great guide to anyone who is new to the field of XAI or is already familiar with the field and is willing to expand their knowledge. A comprehensive review of the state-of-the-art Explainable AI methods starting from visualization, interpretable methods, local and global explanations, time series methods, and finishing with deep learning provides an unparalleled source of information currently unavailable anywhere else. Additionally, notebooks with vivid examples are a great supplement that makes the book even more attractive for practitioners of any level.Overall, the authors provide readers with an enormous breadth of coverage without losing sight of practical aspects, which makes this book truly unique and a great addition to the library of any data scientist.Dr. Andrey Sharapov, Product Data Scientist, Explainable AI Expert and Speaker, Founder of Explainable AI-XAI Group
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Pattern Recognition and Machine Learning Springer-Verlag New York Inc.
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The dramatic growth in practical applications for machine learning over the last ten years has been accompanied by many important developments in the underlying algorithms and techniques. For example, Bayesian methods have grown from a specialist niche to become mainstream, while graphical models have emerged as a general framework for describing and applying probabilistic techniques. The practical applicability of Bayesian methods has been greatly enhanced by the development of a range of approximate inference algorithms such as variational Bayes and expectation propagation, while new models based on kernels have had a significant impact on both algorithms and applications.This completely new textbook reflects these recent developments while providing a comprehensive introduction to the fields of pattern recognition and machine learning. It is aimed at advanced undergraduates or first-year PhD students, as well as researchers and practitioners. No previous knowledge of pattern recognition or machine learning concepts is assumed. Familiarity with multivariate calculus and basic linear algebra isrequired, and some experience in the use of probabilities would be helpful though not essential as the book includes a self-contained introduction to basic probability theory.The book is suitable for courses on machine learning, statistics, computer science, signal processing, computer vision, data mining, and bioinformatics. Extensive support is provided for course instructors, including more than 400 exercises, graded according to difficulty. Example solutions for a subset of the exercises are available from the book web site, while solutions for the remainder can be obtained by instructors from the publisher. The book is supported by a great deal of additional material, and the reader is encouraged to visit the book web site for the latest information.Coming soon: For students, worked solutions to a subset of exercises available on a public web site (for exercises marked "www" in the text) For instructors, worked solutions to remaining exercises from the Springer web site Lecture slides to accompany each chapter Data sets available for download
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Mathematica for Bioinformatics Springer International Publishing AG
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This book offers a comprehensive introduction to using Mathematica and the Wolfram Language for Bioinformatics. The chapters build gradually from basic concepts and the introduction of the Wolfram Language and coding paradigms in Mathematica, to detailed worked examples derived from typical research applications using Wolfram Language code. The coding examples range from basic sequence analysis, accessing genomic databases, differential gene expression, and machine learning implementations to time series analysis of longitudinal omics experiments, multi-omics integration and building dynamic interactive bioinformatics tools using the Wolfram Language. The topics address the daily bioinformatics needs of a broad audience: experimental users looking to understand and visualize their data, beginner bioinformaticians acquiring coding expertise in providing biological research solutions, and practicing expert bioinformaticians working on omics who wish to expand their toolset to include the Wolfram Language.
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Information Theory, Inference and Learning Algorithms Cambridge University Press
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Information theory and inference, taught together in this exciting textbook, lie at the heart of many important areas of modern technology - communication, signal processing, data mining, machine learning, pattern recognition, computational neuroscience, bioinformatics and cryptography. The book introduces theory in tandem with applications. Information theory is taught alongside practical communication systems such as arithmetic coding for data compression and sparse-graph codes for error-correction. Inference techniques, including message-passing algorithms, Monte Carlo methods and variational approximations, are developed alongside applications to clustering, convolutional codes, independent component analysis, and neural networks. Uniquely, the book covers state-of-the-art error-correcting codes, including low-density-parity-check codes, turbo codes, and digital fountain codes - the twenty-first-century standards for satellite communications, disk drives, and data broadcast. Richly illustrated, filled with worked examples and over 400 exercises, some with detailed solutions, the book is ideal for self-learning, and for undergraduate or graduate courses. It also provides an unparalleled entry point for professionals in areas as diverse as computational biology, financial engineering and machine learning.
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Principles and Labs for Deep Learning Elsevier Science & Technology
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Principles and Labs for Deep Learning provides the knowledge and techniques needed to help readers design and develop deep learning models. Deep Learning techniques are introduced through theory, comprehensively illustrated, explained through the TensorFlow source code examples, and analyzed through the visualization of results. The structured methods and labs provided by Dr. Huang and Dr. Le enable readers to become proficient in TensorFlow to build deep Convolutional Neural Networks (CNNs) through custom APIs, high-level Keras APIs, Keras Applications, and TensorFlow Hub. Each chapter has one corresponding Lab with step-by-step instruction to help the reader practice and accomplish a specific learning outcome. Deep Learning has been successfully applied in diverse fields such as computer vision, audio processing, robotics, natural language processing, bioinformatics and chemistry. Because of the huge scope of knowledge in Deep Learning, a lot of time is required to understand and deploy useful, working applications, hence the importance of this new resource. Both theory lessons and experiments are included in each chapter to introduce the techniques and provide source code examples to practice using them. All Labs for this book are placed on GitHub to facilitate the download. The book is written based on the assumption that the reader knows basic Python for programming and basic Machine Learning. Introduces readers to the usefulness of neural networks and Deep Learning methodsProvides readers with in-depth understanding of the architecture and operation of Deep Convolutional Neural NetworksDemonstrates the visualization needed for designing neural networksProvides readers with an in-depth understanding of regression problems, binary classification problems, multi-category classification problems, Variational Auto-Encoder, Generative Adversarial Network, and Object detection
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Genome Data Analysis Springer Verlag, Singapore
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This book describes recent advances in genomics and bioinformatics and provides numerous examples of genome data analysis that illustrate its relevance to real world problems and will improve the reader's bioinformatics skills. Basic data preprocessing with normalization and filtering, primary pattern analysis, and machine learning algorithms using R and Python are demonstrated for gene-expression microarrays, genotyping microarrays, next-generation sequencing data, epigenomic data, and biological network and semantic analyses. In addition, detailed attention is devoted to integrative genomic data analysis, including multivariate data projection, gene-metabolic pathway mapping, automated biomolecular annotation, text mining of factual and literature databases, and integrated management of biomolecular databases.The book is primarily intended for life scientists, medical scientists, statisticians, data processing researchers, engineers, and other beginners in bioinformatics who are experiencing difficulty in approaching the field. However, it will also serve as a simple guideline for experts unfamiliar with the new, developing subfield of genomic analysis within bioinformatics.
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Metaheuristics - From Design to Implementation John Wiley & Sons Inc
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A unified view of metaheuristics§This book provides a complete background on metaheuristics and shows readers how to design and implement efficient algorithms to solve complex optimization problems across a diverse range of applications, from networking and bioinformatics to engineering design, routing, and scheduling. It presents the main design questions for all families of metaheuristics and clearly illustrates how to implement the algorithms under a software framework to reuse both the design and code.§Throughout the book, the key search components of metaheuristics are considered as a toolbox for:§Designing efficient metaheuristics (e.g. local search, tabu search, simulated annealing, evolutionary algorithms, particle swarm optimization, scatter search, ant colonies, bee colonies, artificial immune systems) for optimization problems§Designing efficient metaheuristics for multi-objective optimization problems§Designing hybrid, parallel, and distributed metaheuristics§Implementing metaheuristics on sequential and parallel machines§Using many case studies and treating design and implementation independently, this book gives readers the skills necessary to solve large-scale optimization problems quickly and efficiently. It is a valuable reference for practicing engineers and researchers from diverse areas dealing with optimization or machine learning; and graduate students in computer science, operations research, control, engineering, business and management, and applied mathematics.A UNIFIED VIEW OF METAHEURISTICS§This book provides a complete background on metaheuristics and shows readers how to design and implement efficient algorithms to solve complex optimization problems across a diverse range of applications, from networking and bioinformatics to engineering design, routing, and scheduling. It presents the main design questions for all families of metaheuristics and clearly illustrates how to implement the algorithms under a software framework to reuse both the design and code.§Throughout the book, the key search components of metaheuristics are considered as a toolbox for:§Designing efficient metaheuristics (e.g. local search, tabu search, simulated annealing, evolutionary algorithms, particle swarm optimization, scatter search, ant colonies, bee colonies, artificial immune systems) for optimization problems§Designing efficient metaheuristics for multi-objective optimization problems§Designing hybrid, parallel, and distributed metaheuristics§Implementing metaheuristics on sequential and parallel machines§Using many case studies and treating design and implementation independently, this book gives readers the skills necessary to solve large-scale optimization problems quickly and efficiently. It is a valuable reference for practicing engineers and researchers from diverse areas dealing with optimization or machine learning; and graduate students in computer science, operations research, control, engineering, business and management, and applied mathematics.
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Python Programming for Biology Cambridge University Press
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Do you have a biological question that could be readily answered by computational techniques, but little experience in programming? Do you want to learn more about the core techniques used in computational biology and bioinformatics? Written in an accessible style, this guide provides a foundation for both newcomers to computer programming and those interested in learning more about computational biology. The chapters guide the reader through: a complete beginners' course to programming in Python, with an introduction to computing jargon; descriptions of core bioinformatics methods with working Python examples; scientific computing techniques, including image analysis, statistics and machine learning. This book also functions as a language reference written in straightforward English, covering the most common Python language elements and a glossary of computing and biological terms. This title will teach undergraduates, postgraduates and professionals working in the life sciences how to program with Python, a powerful, flexible and easy-to-use language.
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Deep Generative Modeling Springer Nature Switzerland AG
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This textbook tackles the problem of formulating AI systems by combining probabilistic modeling and deep learning. Moreover, it goes beyond typical predictive modeling and brings together supervised learning and unsupervised learning. The resulting paradigm, called deep generative modeling, utilizes the generative perspective on perceiving the surrounding world. It assumes that each phenomenon is driven by an underlying generative process that defines a joint distribution over random variables and their stochastic interactions, i.e., how events occur and in what order. The adjective "deep" comes from the fact that the distribution is parameterized using deep neural networks. There are two distinct traits of deep generative modeling. First, the application of deep neural networks allows rich and flexible parameterization of distributions. Second, the principled manner of modeling stochastic dependencies using probability theory ensures rigorous formulation and prevents potential flaws in reasoning. Moreover, probability theory provides a unified framework where the likelihood function plays a crucial role in quantifying uncertainty and defining objective functions. Deep Generative Modeling is designed to appeal to curious students, engineers, and researchers with a modest mathematical background in undergraduate calculus, linear algebra, probability theory, and the basics in machine learning, deep learning, and programming in Python and PyTorch (or other deep learning libraries). It will appeal to students and researchers from a variety of backgrounds, including computer science, engineering, data science, physics, and bioinformatics, who wish to become familiar with deep generative modeling. To engage the reader, the book introduces fundamental concepts with specific examples and code snippets. The full code accompanying the book is available on github.The ultimate aim of the book is to outline the most important techniques in deep generative modeling and, eventually, enable readers to formulate new models and implement them.
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Probability, Random Processes, and Statistical Analysis Cambridge University Press
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Together with the fundamentals of probability, random processes and statistical analysis, this insightful book also presents a broad range of advanced topics and applications. There is extensive coverage of Bayesian vs. frequentist statistics, time series and spectral representation, inequalities, bound and approximation, maximum-likelihood estimation and the expectation-maximization (EM) algorithm, geometric Brownian motion and Itô process. Applications such as hidden Markov models (HMM), the Viterbi, BCJR, and Baum
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